{"id":282,"date":"2024-03-23T09:40:16","date_gmt":"2024-03-23T09:40:16","guid":{"rendered":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/?post_type=chapter&#038;p=282"},"modified":"2024-11-02T18:42:29","modified_gmt":"2024-11-02T18:42:29","slug":"5-6-molecular-basis-of-inheritance","status":"publish","type":"chapter","link":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/chapter\/5-6-molecular-basis-of-inheritance\/","title":{"raw":"5.6 Molecular basis of inheritance","rendered":"5.6 Molecular basis of inheritance"},"content":{"raw":"<h1>DNA<\/h1>\r\n<span>The genetic (hereditary) material for all living things is composed of DNA (deoxyribonucleic acid). It is the blue print of an organism. The DNA stores the coded information that control the biological function of cells.<\/span>\r\n\r\n<span>\u00a0 The genetic material transmits this hereditary information in a stable form for the cell and organism through a molecular process called <\/span><strong><span>\u00a0<\/span>replication<\/strong><span>\u00a0of DNA. <\/span>\r\n\r\n<span>The replication process ensures high accuracy in copying the genetic information so that all progeny cells receive the same information.\u00a0<\/span>\r\n<h2>Chemical\u00a0Structure of DNA\u00a0Subunits<\/h2>\r\nDNA is a polymer made of nucleotide subunits.\r\n\r\nA<span>\u00a0<\/span><strong>nucleotide<\/strong><span>\u00a0<\/span>consists of 3 chemical groups; a sugar, a phosphate and a nitrogenous base . In the case of DNA, the sugar is deoxyribose and in Ribonucleic acid (RNA), the sugar is ribose\r\n\r\n<span>DNA contains\u00a0 four types of nitrogenous bases namely Adenine (A) and guanine (G) , which are double-ringed purines, and cytosine (C) and thymine (T) , which are smaller, single-ringed pyrimidines. The nucleotide is named according to the nitrogenous base it contains.<\/span>\r\n\r\n<img src=\"https:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2015\/02\/Figure_09_01_02a.jpg\" class=\"aligncenter\" width=\"361\" height=\"203\" \/>\r\n<p style=\"text-align: center\"><a href=\"https:\/\/opentextbc.ca\/biology\/chapter\/9-1-the-structure-of-dna\/\" target=\"_blank\" rel=\"noopener\">\"DNA Nucleotide\"<\/a><span>\u00a0by\u00a0<\/span><a class=\"highlight\">Charles Molnar and Jane Gair<span>\u00a0<\/span><\/a><a><\/a><a><\/a><span>is licensed under\u00a0<\/span><a href=\"http:\/\/creativecommons.org\/licenses\/by\/4.0\" target=\"_blank\" rel=\"noopener\">CC BY 4.0<\/a><\/p>\r\n<img src=\"https:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2015\/02\/Figure_09_01_02b.jpg\" width=\"412\" height=\"376\" class=\"aligncenter\" \/>\r\n<p style=\"text-align: center\"><a href=\"https:\/\/opentextbc.ca\/biology\/chapter\/9-1-the-structure-of-dna\/\" target=\"_blank\" rel=\"noopener\">\"Purines and Pyrimidines\"<\/a><span>\u00a0by\u00a0<\/span><a>Charles Molnar and Jane Gair<span>\u00a0<\/span><\/a><a><\/a><a><\/a><span>is licensed under\u00a0<\/span><a href=\"http:\/\/creativecommons.org\/licenses\/by\/4.0\" target=\"_blank\" rel=\"noopener\">CC BY 4.0<\/a><\/p>\r\n<span> DNA molecule is actually composed of two single strands held together along their length with hydrogen bonds between the bases.<\/span>\r\n\r\n<span>Each of the DNA strand\u00a0 is a long polymer of\u00a0 nucleotides is formed by the nucleotide polymerisation where a phosphate group of one nucleotide bonds covalently with the sugar molecule of the next nucleotide, and so on, . <\/span>\r\n\r\n<span>The sugar\u2013phosphate groups line up in a \u201cbackbone\u201d for each single strand of DNA, and the nucleotide bases stick out from this backbone. <\/span>\r\n\r\n<span>The carbon atoms of the five-carbon ,deoxy ribose sugar are numbered clockwise from the oxygen as 1\u2032, 2\u2032, 3\u2032, 4\u2032, and 5\u2032 (1\u2032 is read as \u201cone prime\u201d).<\/span>\r\n\r\n<span> The phosphate group is attached to the 5\u2032 carbon of one nucleotide makes a nucleophilic attack on the OH group at 3\u2032 carbon of the next nucleotide and forms a phospho di ester bond , linking the nucleotides together.<\/span>\r\n\r\n<span>The two strands\u00a0 strands of DNA are twisted around each other to form a right-handed\u00a0 double helix.<\/span>\r\n\r\n<span> Base-pairing takes place between a purine and pyrimidine: namely,\u00a0<\/span><strong>A pairs with T, and G pairs with C<\/strong><span>.<\/span>\r\n\r\n<span>This is the basis for <strong>Chargaff\u2019s rule i.e.,<\/strong> due to the complementarity of the bases ,\u00a0there is as much adenine as thymine in a DNA molecule and as much guanine as cytosine. <\/span>\r\n\r\n<span>Adenine and thymine are connected by two hydrogen bonds, and cytosine and guanine are connected by three hydrogen bonds. <\/span>\r\n\r\n<span>The two strands of DNA are anti-parallel in nature; that is, one strand will have the 3\u2032 carbon of the sugar in the \u201cupward\u201d position, whereas the other strand will have the 5\u2032 carbon in the upward position.<\/span>\r\n\r\n&nbsp;\r\n\r\n<img src=\"https:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2015\/02\/Figure_09_01_03ab.jpg\" width=\"533\" height=\"289\" class=\"aligncenter\" \/>\r\n<p style=\"text-align: center\"><a href=\"https:\/\/opentextbc.ca\/biology\/chapter\/9-1-the-structure-of-dna\/\" target=\"_blank\" rel=\"noopener\">\"DNA\"<\/a><span>\u00a0by\u00a0<\/span><a>Charles Molnar and Jane Gair<span>\u00a0<\/span><\/a><a><\/a><a><\/a><span>is licensed under\u00a0<\/span><a href=\"http:\/\/creativecommons.org\/licenses\/by\/4.0\" target=\"_blank\" rel=\"noopener\">CC BY 4.0<\/a><\/p>\r\n\r\n<h1>The Structure of RNA<\/h1>\r\n<p id=\"fs-idm65095760\">There is a second polymer of nucleotides in the cell ,\u00a0 called ribonucleic acid, or RNA.<\/p>\r\nEach of the nucleotides in RNA is made up of\r\n<ul>\r\n \t<li>a nitrogenous base- namely adenine,\u00a0 guanine, uracil and cytosine (they do<span>\u00a0<\/span><strong>not contain thymine<\/strong>, which is instead<span>\u00a0<\/span><strong>replaced by uracil<\/strong>, symbolized by a \u201cU.)\u201d<\/li>\r\n \t<li>a five-carbon\u00a0 Ribose sugar, and<\/li>\r\n \t<li>a phosphate group.<\/li>\r\n<\/ul>\r\nRibose has a hydroxyl group at the 2\u2032 carbon, unlike deoxyribose, which has only a hydrogen atom\r\n<figure id=\"fig-ch09_01_04\"><figcaption>\u00a0<\/figcaption><\/figure>\r\n<figure>\r\n<figure id=\"attachment_236\" class=\"wp-caption aligncenter\" aria-describedby=\"caption-attachment-236\"><a href=\"http:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2015\/02\/Figure_09_01_04f.jpg\"><img loading=\"lazy\" class=\"wp-image-4573 size-full\" src=\"https:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2021\/03\/Figure_09_01_04f.jpg\" alt=\"A figure showing the structure of ribose and deoxyribose sugars. In ribose, the OH at the 2' position is highlighted in red. In deoxyribose, the H at the 2' position is highlighted in red.\" width=\"544\" height=\"186\" \/><\/a><figcaption id=\"caption-attachment-236\" class=\"wp-caption-text\"><\/figcaption><\/figure>\r\n<a href=\"https:\/\/opentextbc.ca\/biology\/chapter\/9-1-the-structure-of-dna\/\" target=\"_blank\" rel=\"noopener\">\"Ribose and Deoxyribose\"<\/a><span>\u00a0by\u00a0<\/span><a>Charles Molnar and Jane Gair<span>\u00a0<\/span><\/a><a><\/a><a><\/a><span>is licensed under\u00a0<\/span><a href=\"http:\/\/creativecommons.org\/licenses\/by\/4.0\" target=\"_blank\" rel=\"noopener\">CC BY 4.0<\/a><\/figure>\r\n<p id=\"fs-idp6181232\">\u00a0Unlike DNA which is double stranded , RNA exists as a single-stranded molecule.<\/p>\r\nBased on their function , RNA is classified int o three types namely:\u00a0 messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA)\r\n\r\nAll of these RNA molecules are involved in the production of proteins from the DNA code.\r\n\r\n<strong>Test your Understanding<\/strong>\r\n\r\n<span>[h5p id=\"86\"]<\/span>\r\n\r\nTo know more about DNA packaging in to the nucleus visit the chapter on <span>Eukaryotic gene organization \u2013 Packaging of DNA to Chromosome, from <a href=\"https:\/\/pressbooks.justwrite.in\/understanding-gene-regulation\/\" title=\"Go to the cover page of Understanding Gene Regulation and Gene expression\" rel=\"home\">Understanding Gene Regulation and Gene expression<\/a><\/span>\r\n<h1 class=\"entry-title\">DNA Replication<\/h1>\r\n<span>When a cell divides, <\/span>each daughter cell receives an identical copy of the DNA.\r\n\r\n<span>This is accomplished by the process of DNA replication which <\/span><span>occurs during the synthesis phase, or S phase, of the cell cycle, before the cell enters mitosis or meiosis.<\/span>\r\n\r\n<span>During DNA replication, each of the two strands of the DNA\u00a0 double helix serves as a template from which new strands are copied. <\/span>\r\n\r\n<span>The new strand will be complementary to the parental or \u201cold\u201d strand.\u00a0<\/span>\r\n\r\n<span>Each newly formed DNA\u00a0 double strand consists of one parental strand and one new daughter strand. This is known as <strong>semiconservative replication.<\/strong> <\/span>\r\n\r\n<span>The two DNA copies\u00a0 formed have an identical sequence of nucleotide bases and are divided equally into two daughter cells.<\/span>\r\n<h1>DNA Replication in Eukaryotes<\/h1>\r\n<span>The eukaryotic genomes are very complex and therefore DNA replication is a <\/span><strong>very complicated process<\/strong><span>\u00a0<\/span>\r\n\r\n<span>It\u00a0 involves several enzymes and other proteins. <\/span>\r\n\r\n<span>It occurs in three main stages namely : initiation, elongation, and termination.<\/span>\r\n<h2>Initiation<\/h2>\r\n<span>There are specific nucleotide sequences called <strong>origins of replication<\/strong> at which replication begins. As eukaryotic DNA is very long there are multiple origins of replication on the eukaryotic chromosome<\/span>\r\n\r\n<span> Certain proteins\u00a0 called <strong>Origin Recognition Complexes ( ORCs)<\/strong> bind to the origin of replication <\/span>\r\n\r\n<span>\u00a0An enzyme called <strong>helicase<\/strong> unwinds the DNA\u00a0 and opens up the DNA helix. <\/span>\r\n\r\n<span>As the DNA opens up, Y-shaped structures called<strong> replication forks<\/strong> are formed <\/span><span>. <\/span>\r\n\r\n<span>Two replication forks are formed at the origin of replication, and these get extended in both directions as replication proceeds. <\/span>\r\n\r\n<span>Replication can occur simultaneously from several Origins\u00a0 in the genome.<\/span>\r\n<h2>Elongation<\/h2>\r\n<span>During elongation, an enzyme called<\/span><strong><span>\u00a0<\/span>DNA polymerase<\/strong><span>\u00a0adds DNA nucleotides to the 3\u2032 end of the template.<\/span>\r\n\r\nBut DNA polymerase requires a primer for its action.\r\n\r\nTherefore a short stretch of RNA is synthesised by an enzyme called Primase, serves as the primer.\r\n\r\n<span>This primer is removed later, and the nucleotides are replaced with DNA nucleotides.<\/span>\r\n\r\n<span> One strand, which is complementary to the parental DNA strand, is synthesized continuously toward the replication fork so the polymerase can add nucleotides in this direction. This continuously synthesized strand is known as the <strong>leading strand.<\/strong> Because DNA polymerase can only synthesize DNA in a 5\u2032 to 3\u2032 direction, <\/span>\r\n\r\n<span>Whereas the other new strand is synthesized in short pieces called <strong>Okazaki fragments<\/strong>. <\/span>\r\n\r\n<span>Each of the Okazaki fragments\u00a0 require a primer made of RNA to start the synthesis. T<\/span>\r\n\r\n<span>The strand with the Okazaki fragments is known as the<strong> lagging strand<\/strong>. <\/span>\r\n\r\n<span>As synthesis of the lagging strand proceeds, an enzyme called endonuclease removes the RNA primer, which is then replaced with DNA nucleotides, and the gaps between fragments are sealed by an enzyme called <strong>DNA ligase.<\/strong><\/span>\r\n<h2>Termination<\/h2>\r\nTelomere Replication\r\n\r\nAs\u00a0<span>\u00a0eukaryotic chromosomes are linear, DNA replication comes to the end of a line in eukaryotic chromosomes. <\/span><span>\u00a0The DNA polymerase enzyme adds nucleotides in the leading strand until the end of the chromosome is reached; however, on the lagging strand there is no place for a primer to be made for the DNA fragment to be copied at the end of the chromosome.<\/span>\r\n\r\n<span> This presents a problem for the cell\u00a0 which is referred as <strong>End Replication problem.<\/strong><\/span>\r\n\r\nIf this is not solved ,\u00a0<span>\u00a0over time these ends get progressively shorter as cells continue to divide.<\/span>\r\n\r\n<span> The ends of the linear chromosomes are known as <strong>telomeres,<\/strong> which have repetitive sequences that do not code for a particular gene.\u00a0<\/span><span>As a consequence, it is telomeres that are shortened with each round of DNA replication instead of genes. These telomeres are synthesized by enzymes called<strong> telomerases\u00a0<\/strong><\/span>\r\n\r\n<span> For example, in humans, a six base-pair sequence, TTAGGG, is repeated 100 to 1000 times.<\/span>\r\n\r\n<span> The telomerase comprises of an an template RNA and a protein. <\/span>\r\n\r\n<span>The RNA of Telomerase attaches to the end of the eukaryotic chromosome.<\/span>\r\n\r\n<span>Complementary bases to the RNA template are added <\/span>\r\n\r\n<span>Once the lagging strand template is sufficiently elongated, DNA polymerase can now add nucleotides that are complementary to the ends of the chromosomes. <\/span>\r\n\r\n<span>Thus, the ends of the chromosomes are replicated.<\/span>\r\n\r\n<img src=\"https:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2021\/03\/Figure_09_02_04.jpg\" alt=\"Telomerase has an associated RNA that complements the 5' overhang at the end of the chromosome. The RNA template is used to synthesize the complementary strand. Telomerase then shifts, and the process is repeated. Next, primase and DNA polymerase synthesize the rest of the complementary strand.\" class=\"aligncenter\" \/>\r\n<p style=\"text-align: center\"><strong><a href=\"https:\/\/opentextbc.ca\/biology\/chapter\/9-1-the-structure-of-dna\/\" target=\"_blank\" rel=\"noopener\">\"Ends of eukaryotic chromosomes\"<\/a><span>\u00a0by\u00a0<\/span><a>Charles Molnar and Jane Gair<span>\u00a0<\/span><\/a><a><\/a><a><\/a><span>is licensed under\u00a0<\/span><a href=\"http:\/\/creativecommons.org\/licenses\/by\/4.0\" target=\"_blank\" rel=\"noopener\">CC BY 4.0<\/a><\/strong><\/p>\r\n\r\n<h2>DNA Replication in Prokaryotes<\/h2>\r\n<span>The prokaryotic chromosome is a circular molecule with a less extensive coiling structure than eukaryotic chromosomes.<\/span>\r\n\r\nThe 4.6 million base pairs that make up an Escherichia coli single circular chromosome are duplicated every around 42 minutes, beginning at a single replication origin and moving in both directions around the chromosome. Accordingly, about 1000 nucleotides are inserted per second. Compared to eukaryotes, the process is far faster.\r\n<h1>DNA Repair<\/h1>\r\nErrors can occur when DNA polymerase adds nucleotides. Every newly inserted base is proofread.During the replication if incorrect bases are added , the incorrect bases are removed\u00a0 and substituted with the proper ones by the Proof reading activity of DNA polymerase and the DNA polymerization proceeds .\r\n\r\nThe majority of errors are fixed during replication, however in cases when this is not possible, the mismatch correction process is used. The incorrectly integrated base is identified by mismatch repair enzymes, which then remove it from the DNA and replace it with the proper base\r\n\r\nAnother kind of repair, known as nucleotide excision repair, involves unwinding and separating the DNA double strand, removing the erroneous bases along with a few bases on the 5\u2032 and 3\u2032 ends, and then using DNA polymerase to duplicate the template and replace them .\r\n\r\nNucleotide excision repair is very crucial in the correction of thymine dimers formed by UV light\u00a0 \u00a0. Two thymine nucleotides next to one another on a single strand are covalently bound to one another instead of their complementary\u00a0 forming a thymine dimer. A mutation will result if the dimer is not taken out and fixed. People who have defects in their genes that repair nucleotide excision are extremely sensitive to UV light and develop skin cancer\r\n\r\nTo know about other molecular process\u00a0<a href=\"https:\/\/pressbooks.justwrite.in\/understanding-gene-regulation\/chapter\/eukaryotic-transcription\/\" title=\"Transcription\"> Transcription<\/a> and<a href=\"https:\/\/pressbooks.justwrite.in\/understanding-gene-regulation\/chapter\/eukaryotic-translation\/\" title=\"Translation\"> Translation<\/a> visit the chapters from <a href=\"https:\/\/pressbooks.justwrite.in\/understanding-gene-regulation\/\" title=\"Go to the cover page of Understanding Gene Regulation and Gene expression\" rel=\"home\">Understanding Gene Regulation and Gene expression<\/a>\r\n\r\n&nbsp;","rendered":"<h1>DNA<\/h1>\n<p><span>The genetic (hereditary) material for all living things is composed of DNA (deoxyribonucleic acid). It is the blue print of an organism. The DNA stores the coded information that control the biological function of cells.<\/span><\/p>\n<p><span>\u00a0 The genetic material transmits this hereditary information in a stable form for the cell and organism through a molecular process called <\/span><strong><span>\u00a0<\/span>replication<\/strong><span>\u00a0of DNA. <\/span><\/p>\n<p><span>The replication process ensures high accuracy in copying the genetic information so that all progeny cells receive the same information.\u00a0<\/span><\/p>\n<h2>Chemical\u00a0Structure of DNA\u00a0Subunits<\/h2>\n<p>DNA is a polymer made of nucleotide subunits.<\/p>\n<p>A<span>\u00a0<\/span><strong>nucleotide<\/strong><span>\u00a0<\/span>consists of 3 chemical groups; a sugar, a phosphate and a nitrogenous base . In the case of DNA, the sugar is deoxyribose and in Ribonucleic acid (RNA), the sugar is ribose<\/p>\n<p><span>DNA contains\u00a0 four types of nitrogenous bases namely Adenine (A) and guanine (G) , which are double-ringed purines, and cytosine (C) and thymine (T) , which are smaller, single-ringed pyrimidines. The nucleotide is named according to the nitrogenous base it contains.<\/span><\/p>\n<p><img decoding=\"async\" src=\"https:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2015\/02\/Figure_09_01_02a.jpg\" class=\"aligncenter\" width=\"361\" height=\"203\" alt=\"image\" \/><\/p>\n<p style=\"text-align: center\"><a href=\"https:\/\/opentextbc.ca\/biology\/chapter\/9-1-the-structure-of-dna\/\" target=\"_blank\" rel=\"noopener\">&#8220;DNA Nucleotide&#8221;<\/a><span>\u00a0by\u00a0<\/span><a class=\"highlight\">Charles Molnar and Jane Gair<span>\u00a0<\/span><\/a><a><\/a><a><\/a><span>is licensed under\u00a0<\/span><a href=\"http:\/\/creativecommons.org\/licenses\/by\/4.0\" target=\"_blank\" rel=\"noopener\">CC BY 4.0<\/a><\/p>\n<p><img decoding=\"async\" src=\"https:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2015\/02\/Figure_09_01_02b.jpg\" width=\"412\" height=\"376\" class=\"aligncenter\" alt=\"image\" \/><\/p>\n<p style=\"text-align: center\"><a href=\"https:\/\/opentextbc.ca\/biology\/chapter\/9-1-the-structure-of-dna\/\" target=\"_blank\" rel=\"noopener\">&#8220;Purines and Pyrimidines&#8221;<\/a><span>\u00a0by\u00a0<\/span><a>Charles Molnar and Jane Gair<span>\u00a0<\/span><\/a><a><\/a><a><\/a><span>is licensed under\u00a0<\/span><a href=\"http:\/\/creativecommons.org\/licenses\/by\/4.0\" target=\"_blank\" rel=\"noopener\">CC BY 4.0<\/a><\/p>\n<p><span> DNA molecule is actually composed of two single strands held together along their length with hydrogen bonds between the bases.<\/span><\/p>\n<p><span>Each of the DNA strand\u00a0 is a long polymer of\u00a0 nucleotides is formed by the nucleotide polymerisation where a phosphate group of one nucleotide bonds covalently with the sugar molecule of the next nucleotide, and so on, . <\/span><\/p>\n<p><span>The sugar\u2013phosphate groups line up in a \u201cbackbone\u201d for each single strand of DNA, and the nucleotide bases stick out from this backbone. <\/span><\/p>\n<p><span>The carbon atoms of the five-carbon ,deoxy ribose sugar are numbered clockwise from the oxygen as 1\u2032, 2\u2032, 3\u2032, 4\u2032, and 5\u2032 (1\u2032 is read as \u201cone prime\u201d).<\/span><\/p>\n<p><span> The phosphate group is attached to the 5\u2032 carbon of one nucleotide makes a nucleophilic attack on the OH group at 3\u2032 carbon of the next nucleotide and forms a phospho di ester bond , linking the nucleotides together.<\/span><\/p>\n<p><span>The two strands\u00a0 strands of DNA are twisted around each other to form a right-handed\u00a0 double helix.<\/span><\/p>\n<p><span> Base-pairing takes place between a purine and pyrimidine: namely,\u00a0<\/span><strong>A pairs with T, and G pairs with C<\/strong><span>.<\/span><\/p>\n<p><span>This is the basis for <strong>Chargaff\u2019s rule i.e.,<\/strong> due to the complementarity of the bases ,\u00a0there is as much adenine as thymine in a DNA molecule and as much guanine as cytosine. <\/span><\/p>\n<p><span>Adenine and thymine are connected by two hydrogen bonds, and cytosine and guanine are connected by three hydrogen bonds. <\/span><\/p>\n<p><span>The two strands of DNA are anti-parallel in nature; that is, one strand will have the 3\u2032 carbon of the sugar in the \u201cupward\u201d position, whereas the other strand will have the 5\u2032 carbon in the upward position.<\/span><\/p>\n<p>&nbsp;<\/p>\n<p><img decoding=\"async\" src=\"https:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2015\/02\/Figure_09_01_03ab.jpg\" width=\"533\" height=\"289\" class=\"aligncenter\" alt=\"image\" \/><\/p>\n<p style=\"text-align: center\"><a href=\"https:\/\/opentextbc.ca\/biology\/chapter\/9-1-the-structure-of-dna\/\" target=\"_blank\" rel=\"noopener\">&#8220;DNA&#8221;<\/a><span>\u00a0by\u00a0<\/span><a>Charles Molnar and Jane Gair<span>\u00a0<\/span><\/a><a><\/a><a><\/a><span>is licensed under\u00a0<\/span><a href=\"http:\/\/creativecommons.org\/licenses\/by\/4.0\" target=\"_blank\" rel=\"noopener\">CC BY 4.0<\/a><\/p>\n<h1>The Structure of RNA<\/h1>\n<p id=\"fs-idm65095760\">There is a second polymer of nucleotides in the cell ,\u00a0 called ribonucleic acid, or RNA.<\/p>\n<p>Each of the nucleotides in RNA is made up of<\/p>\n<ul>\n<li>a nitrogenous base- namely adenine,\u00a0 guanine, uracil and cytosine (they do<span>\u00a0<\/span><strong>not contain thymine<\/strong>, which is instead<span>\u00a0<\/span><strong>replaced by uracil<\/strong>, symbolized by a \u201cU.)\u201d<\/li>\n<li>a five-carbon\u00a0 Ribose sugar, and<\/li>\n<li>a phosphate group.<\/li>\n<\/ul>\n<p>Ribose has a hydroxyl group at the 2\u2032 carbon, unlike deoxyribose, which has only a hydrogen atom<\/p>\n<figure id=\"fig-ch09_01_04\"><figcaption>\u00a0<\/figcaption><\/figure>\n<figure>\n<figure id=\"attachment_236\" class=\"wp-caption aligncenter\" aria-describedby=\"caption-attachment-236\"><a href=\"http:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2015\/02\/Figure_09_01_04f.jpg\"><img decoding=\"async\" class=\"wp-image-4573 size-full\" src=\"https:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2021\/03\/Figure_09_01_04f.jpg\" alt=\"A figure showing the structure of ribose and deoxyribose sugars. In ribose, the OH at the 2' position is highlighted in red. In deoxyribose, the H at the 2' position is highlighted in red.\" width=\"544\" height=\"186\" \/><\/a><figcaption id=\"caption-attachment-236\" class=\"wp-caption-text\"><\/figcaption><\/figure>\n<p><a href=\"https:\/\/opentextbc.ca\/biology\/chapter\/9-1-the-structure-of-dna\/\" target=\"_blank\" rel=\"noopener\">&#8220;Ribose and Deoxyribose&#8221;<\/a><span>\u00a0by\u00a0<\/span><a>Charles Molnar and Jane Gair<span>\u00a0<\/span><\/a><a><\/a><a><\/a><span>is licensed under\u00a0<\/span><a href=\"http:\/\/creativecommons.org\/licenses\/by\/4.0\" target=\"_blank\" rel=\"noopener\">CC BY 4.0<\/a><\/figure>\n<p id=\"fs-idp6181232\">\u00a0Unlike DNA which is double stranded , RNA exists as a single-stranded molecule.<\/p>\n<p>Based on their function , RNA is classified int o three types namely:\u00a0 messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA)<\/p>\n<p>All of these RNA molecules are involved in the production of proteins from the DNA code.<\/p>\n<p><strong>Test your Understanding<\/strong><\/p>\n<p><span><\/p>\n<div id=\"h5p-86\">\n<div class=\"h5p-iframe-wrapper\"><iframe id=\"h5p-iframe-86\" class=\"h5p-iframe\" data-content-id=\"86\" style=\"height:1px\" src=\"about:blank\" frameBorder=\"0\" scrolling=\"no\" title=\"The Structure of DNA Ch 9.1 Exercises\"><\/iframe><\/div>\n<\/div>\n<p><\/span><\/p>\n<p>To know more about DNA packaging in to the nucleus visit the chapter on <span>Eukaryotic gene organization \u2013 Packaging of DNA to Chromosome, from <a href=\"https:\/\/pressbooks.justwrite.in\/understanding-gene-regulation\/\" title=\"Go to the cover page of Understanding Gene Regulation and Gene expression\" rel=\"home\">Understanding Gene Regulation and Gene expression<\/a><\/span><\/p>\n<h1 class=\"entry-title\">DNA Replication<\/h1>\n<p><span>When a cell divides, <\/span>each daughter cell receives an identical copy of the DNA.<\/p>\n<p><span>This is accomplished by the process of DNA replication which <\/span><span>occurs during the synthesis phase, or S phase, of the cell cycle, before the cell enters mitosis or meiosis.<\/span><\/p>\n<p><span>During DNA replication, each of the two strands of the DNA\u00a0 double helix serves as a template from which new strands are copied. <\/span><\/p>\n<p><span>The new strand will be complementary to the parental or \u201cold\u201d strand.\u00a0<\/span><\/p>\n<p><span>Each newly formed DNA\u00a0 double strand consists of one parental strand and one new daughter strand. This is known as <strong>semiconservative replication.<\/strong> <\/span><\/p>\n<p><span>The two DNA copies\u00a0 formed have an identical sequence of nucleotide bases and are divided equally into two daughter cells.<\/span><\/p>\n<h1>DNA Replication in Eukaryotes<\/h1>\n<p><span>The eukaryotic genomes are very complex and therefore DNA replication is a <\/span><strong>very complicated process<\/strong><span>\u00a0<\/span><\/p>\n<p><span>It\u00a0 involves several enzymes and other proteins. <\/span><\/p>\n<p><span>It occurs in three main stages namely : initiation, elongation, and termination.<\/span><\/p>\n<h2>Initiation<\/h2>\n<p><span>There are specific nucleotide sequences called <strong>origins of replication<\/strong> at which replication begins. As eukaryotic DNA is very long there are multiple origins of replication on the eukaryotic chromosome<\/span><\/p>\n<p><span> Certain proteins\u00a0 called <strong>Origin Recognition Complexes ( ORCs)<\/strong> bind to the origin of replication <\/span><\/p>\n<p><span>\u00a0An enzyme called <strong>helicase<\/strong> unwinds the DNA\u00a0 and opens up the DNA helix. <\/span><\/p>\n<p><span>As the DNA opens up, Y-shaped structures called<strong> replication forks<\/strong> are formed <\/span><span>. <\/span><\/p>\n<p><span>Two replication forks are formed at the origin of replication, and these get extended in both directions as replication proceeds. <\/span><\/p>\n<p><span>Replication can occur simultaneously from several Origins\u00a0 in the genome.<\/span><\/p>\n<h2>Elongation<\/h2>\n<p><span>During elongation, an enzyme called<\/span><strong><span>\u00a0<\/span>DNA polymerase<\/strong><span>\u00a0adds DNA nucleotides to the 3\u2032 end of the template.<\/span><\/p>\n<p>But DNA polymerase requires a primer for its action.<\/p>\n<p>Therefore a short stretch of RNA is synthesised by an enzyme called Primase, serves as the primer.<\/p>\n<p><span>This primer is removed later, and the nucleotides are replaced with DNA nucleotides.<\/span><\/p>\n<p><span> One strand, which is complementary to the parental DNA strand, is synthesized continuously toward the replication fork so the polymerase can add nucleotides in this direction. This continuously synthesized strand is known as the <strong>leading strand.<\/strong> Because DNA polymerase can only synthesize DNA in a 5\u2032 to 3\u2032 direction, <\/span><\/p>\n<p><span>Whereas the other new strand is synthesized in short pieces called <strong>Okazaki fragments<\/strong>. <\/span><\/p>\n<p><span>Each of the Okazaki fragments\u00a0 require a primer made of RNA to start the synthesis. T<\/span><\/p>\n<p><span>The strand with the Okazaki fragments is known as the<strong> lagging strand<\/strong>. <\/span><\/p>\n<p><span>As synthesis of the lagging strand proceeds, an enzyme called endonuclease removes the RNA primer, which is then replaced with DNA nucleotides, and the gaps between fragments are sealed by an enzyme called <strong>DNA ligase.<\/strong><\/span><\/p>\n<h2>Termination<\/h2>\n<p>Telomere Replication<\/p>\n<p>As\u00a0<span>\u00a0eukaryotic chromosomes are linear, DNA replication comes to the end of a line in eukaryotic chromosomes. <\/span><span>\u00a0The DNA polymerase enzyme adds nucleotides in the leading strand until the end of the chromosome is reached; however, on the lagging strand there is no place for a primer to be made for the DNA fragment to be copied at the end of the chromosome.<\/span><\/p>\n<p><span> This presents a problem for the cell\u00a0 which is referred as <strong>End Replication problem.<\/strong><\/span><\/p>\n<p>If this is not solved ,\u00a0<span>\u00a0over time these ends get progressively shorter as cells continue to divide.<\/span><\/p>\n<p><span> The ends of the linear chromosomes are known as <strong>telomeres,<\/strong> which have repetitive sequences that do not code for a particular gene.\u00a0<\/span><span>As a consequence, it is telomeres that are shortened with each round of DNA replication instead of genes. These telomeres are synthesized by enzymes called<strong> telomerases\u00a0<\/strong><\/span><\/p>\n<p><span> For example, in humans, a six base-pair sequence, TTAGGG, is repeated 100 to 1000 times.<\/span><\/p>\n<p><span> The telomerase comprises of an an template RNA and a protein. <\/span><\/p>\n<p><span>The RNA of Telomerase attaches to the end of the eukaryotic chromosome.<\/span><\/p>\n<p><span>Complementary bases to the RNA template are added <\/span><\/p>\n<p><span>Once the lagging strand template is sufficiently elongated, DNA polymerase can now add nucleotides that are complementary to the ends of the chromosomes. <\/span><\/p>\n<p><span>Thus, the ends of the chromosomes are replicated.<\/span><\/p>\n<p><img decoding=\"async\" src=\"https:\/\/opentextbc.ca\/biology\/wp-content\/uploads\/sites\/96\/2021\/03\/Figure_09_02_04.jpg\" alt=\"Telomerase has an associated RNA that complements the 5' overhang at the end of the chromosome. The RNA template is used to synthesize the complementary strand. Telomerase then shifts, and the process is repeated. Next, primase and DNA polymerase synthesize the rest of the complementary strand.\" class=\"aligncenter\" \/><\/p>\n<p style=\"text-align: center\"><strong><a href=\"https:\/\/opentextbc.ca\/biology\/chapter\/9-1-the-structure-of-dna\/\" target=\"_blank\" rel=\"noopener\">&#8220;Ends of eukaryotic chromosomes&#8221;<\/a><span>\u00a0by\u00a0<\/span><a>Charles Molnar and Jane Gair<span>\u00a0<\/span><\/a><a><\/a><a><\/a><span>is licensed under\u00a0<\/span><a href=\"http:\/\/creativecommons.org\/licenses\/by\/4.0\" target=\"_blank\" rel=\"noopener\">CC BY 4.0<\/a><\/strong><\/p>\n<h2>DNA Replication in Prokaryotes<\/h2>\n<p><span>The prokaryotic chromosome is a circular molecule with a less extensive coiling structure than eukaryotic chromosomes.<\/span><\/p>\n<p>The 4.6 million base pairs that make up an Escherichia coli single circular chromosome are duplicated every around 42 minutes, beginning at a single replication origin and moving in both directions around the chromosome. Accordingly, about 1000 nucleotides are inserted per second. Compared to eukaryotes, the process is far faster.<\/p>\n<h1>DNA Repair<\/h1>\n<p>Errors can occur when DNA polymerase adds nucleotides. Every newly inserted base is proofread.During the replication if incorrect bases are added , the incorrect bases are removed\u00a0 and substituted with the proper ones by the Proof reading activity of DNA polymerase and the DNA polymerization proceeds .<\/p>\n<p>The majority of errors are fixed during replication, however in cases when this is not possible, the mismatch correction process is used. The incorrectly integrated base is identified by mismatch repair enzymes, which then remove it from the DNA and replace it with the proper base<\/p>\n<p>Another kind of repair, known as nucleotide excision repair, involves unwinding and separating the DNA double strand, removing the erroneous bases along with a few bases on the 5\u2032 and 3\u2032 ends, and then using DNA polymerase to duplicate the template and replace them .<\/p>\n<p>Nucleotide excision repair is very crucial in the correction of thymine dimers formed by UV light\u00a0 \u00a0. Two thymine nucleotides next to one another on a single strand are covalently bound to one another instead of their complementary\u00a0 forming a thymine dimer. A mutation will result if the dimer is not taken out and fixed. People who have defects in their genes that repair nucleotide excision are extremely sensitive to UV light and develop skin cancer<\/p>\n<p>To know about other molecular process\u00a0<a href=\"https:\/\/pressbooks.justwrite.in\/understanding-gene-regulation\/chapter\/eukaryotic-transcription\/\" title=\"Transcription\"> Transcription<\/a> and<a href=\"https:\/\/pressbooks.justwrite.in\/understanding-gene-regulation\/chapter\/eukaryotic-translation\/\" title=\"Translation\"> Translation<\/a> visit the chapters from <a href=\"https:\/\/pressbooks.justwrite.in\/understanding-gene-regulation\/\" title=\"Go to the cover page of Understanding Gene Regulation and Gene expression\" rel=\"home\">Understanding Gene Regulation and Gene expression<\/a><\/p>\n<p>&nbsp;<\/p>\n","protected":false},"author":1,"menu_order":6,"template":"","meta":{"om_disable_all_campaigns":false,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"_uf_show_specific_survey":0,"_uf_disable_surveys":false,"pb_show_title":"on","pb_short_title":"Molecular basis of Inheritance","pb_subtitle":"Molecular basis of Inheritance","pb_authors":["malathi"],"pb_section_license":"cc-by-sa"},"chapter-type":[],"contributor":[62],"license":[54],"class_list":["post-282","chapter","type-chapter","status-publish","hentry","contributor-malathi","license-cc-by-sa"],"aioseo_notices":[],"part":57,"_links":{"self":[{"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/pressbooks\/v2\/chapters\/282","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/pressbooks\/v2\/chapters"}],"about":[{"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/wp\/v2\/types\/chapter"}],"author":[{"embeddable":true,"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/wp\/v2\/users\/1"}],"version-history":[{"count":30,"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/pressbooks\/v2\/chapters\/282\/revisions"}],"predecessor-version":[{"id":1374,"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/pressbooks\/v2\/chapters\/282\/revisions\/1374"}],"part":[{"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/pressbooks\/v2\/parts\/57"}],"metadata":[{"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/pressbooks\/v2\/chapters\/282\/metadata\/"}],"wp:attachment":[{"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/wp\/v2\/media?parent=282"}],"wp:term":[{"taxonomy":"chapter-type","embeddable":true,"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/pressbooks\/v2\/chapter-type?post=282"},{"taxonomy":"contributor","embeddable":true,"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/wp\/v2\/contributor?post=282"},{"taxonomy":"license","embeddable":true,"href":"https:\/\/pressbooks.justwrite.in\/interactive-biology-secondary\/wp-json\/wp\/v2\/license?post=282"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}